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#bioinformatics

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Leszek<p>Group leader position in Oslo, Norway<br><a href="https://genomic.social/tags/JobAd" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>JobAd</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <br><a href="https://www.jobbnorge.no/en/available-jobs/job/282908/group-leader" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">jobbnorge.no/en/available-jobs</span><span class="invisible">/job/282908/group-leader</span></a></p>
MottG<p>"Valsci: an open-source, self-hostable literature review utility for automated large-batch scientific claim verification using large language models"</p><p>We introduce Valsci, an open-source, self-hostable utility that automates large-batch scientific claim verification using any OpenAI-compatible large language model. Valsci unites RAG with structured bibliometric scoring and chain-of-thought prompting.</p><p><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-025-06159-4" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">bmcbioinformatics.biomedcentra</span><span class="invisible">l.com/articles/10.1186/s12859-025-06159-4</span></a></p><p><a href="https://researchbuzz.masto.host/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>research</span></a> <a href="https://researchbuzz.masto.host/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://researchbuzz.masto.host/tags/medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>medicine</span></a></p>
ISEP<p>New <a href="https://mstdn.science/tags/ISEPpapers" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ISEPpapers</span></a>! New T2T assembly of <a href="https://mstdn.science/tags/Cryptosporidium" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Cryptosporidium</span></a> parvum IOWA II annotated with Legacy-Compatible Gene identifiers <a href="https://www.nature.com/articles/s41597-025-05364-3" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41597-025</span><span class="invisible">-05364-3</span></a> </p><p><a href="https://mstdn.science/tags/Protists" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Protists</span></a> <a href="https://mstdn.science/tags/Microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Microbes</span></a> <a href="https://mstdn.science/tags/Parasites" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Parasites</span></a> <a href="https://mstdn.science/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://mstdn.science/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mstdn.science/tags/Genome" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genome</span></a> <a href="https://mstdn.science/tags/Sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Sequencing</span></a></p>
Physalia-courses<p>🚨 Last seats alert! 🚨<br>Our GWAS course kicks off next week (23–27 June)💥<br>Learn the full pipeline—from study design to result interpretation—with hands-on sessions using R and PLINK. 💻🧬</p><p>👉 Grab your spot: <a href="https://www.physalia-courses.org/courses-workshops/course49/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">physalia-courses.org/courses-w</span><span class="invisible">orkshops/course49/</span></a></p><p><a href="https://ecoevo.social/tags/GWAS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GWAS</span></a> <a href="https://ecoevo.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Genomics</span></a> <a href="https://ecoevo.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://ecoevo.social/tags/Rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Rstats</span></a></p>
Johan Nyström-Persson<p>Excited to announce our paper "Precise and scalable metagenomic profiling with sample-tailored minimizer libraries". <a href="https://academic.oup.com/nargab/article/7/2/lqaf076/8158581#522744339" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">academic.oup.com/nargab/articl</span><span class="invisible">e/7/2/lqaf076/8158581#522744339</span></a></p><p>1) We introduce a new implementation of the Kraken 2 method on Apache Spark, which has comparable cost-performance when classifying multiple samples.</p><p><a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>metagenomics</span></a> <a href="https://genomic.social/tags/Kraken2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Kraken2</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Amici Is Me 🇵🇸 🇺🇦 🇳🇴<p>Writing my own peptide cutter because I think cleaver package in R has an outdated trypsin algorithm. Getting 25 fragments on the cleaver result, while manual peptide cutter on Expasy gives 27</p><p><a href="https://fribygda.no/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Frank Aylward<p>What's the easiest way to create a GenBank file from FASTA, GFF, BED, etc? All of the ways I know are unnecessarily difficult. </p><p>I have always avoided GenBank format, but it's unavoidable sometimes. </p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a></p>
Marc Robinson-Rechavi<p>Editorial <span class="h-card" translate="no"><a href="https://mstdn.science/@SIB" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>SIB</span></a></span> by <span class="h-card" translate="no"><a href="https://mstdn.science/@dessimoz" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>dessimoz</span></a></span> <br>"we must ensure (Switzerland's) continued science leadership – including in data expertise and infrastructure"<br><a href="https://www.sib.swiss/news/switzerlands-science-future-continued-leadership-or-drift-into-decline" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sib.swiss/news/switzerlands-sc</span><span class="invisible">ience-future-continued-leadership-or-drift-into-decline</span></a> <a href="https://ecoevo.social/tags/Switzerland" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Switzerland</span></a> <a href="https://ecoevo.social/tags/SwissScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>SwissScience</span></a> <a href="https://ecoevo.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>DataScience</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/ScienceFunding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>ScienceFunding</span></a></p>
Eugene F. Baulin<p>📢Job Alert: Postdoctoral Researcher in the Laboratory of RNA Algorithms at <a href="https://imol.institute/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">imol.institute/</span><span class="invisible"></span></a>, up to three years, fully funded by <a href="https://ncn.gov.pl/en" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">ncn.gov.pl/en</span><span class="invisible"></span></a> </p><p>Details here: <a href="https://euraxess.ec.europa.eu/jobs/350755" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">euraxess.ec.europa.eu/jobs/350</span><span class="invisible">755</span></a> </p><p><a href="https://mastodon.social/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>postdoc</span></a> <a href="https://mastodon.social/tags/Academia" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Academia</span></a> <a href="https://mastodon.social/tags/Position" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Position</span></a> <a href="https://mastodon.social/tags/Job" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Job</span></a> <a href="https://mastodon.social/tags/Research" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Research</span></a> <a href="https://mastodon.social/tags/RNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNA</span></a> <a href="https://mastodon.social/tags/Structure" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Structure</span></a> <a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mastodon.social/tags/Poland" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Poland</span></a> <a href="https://mastodon.social/tags/Warsaw" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Warsaw</span></a> <a href="https://mastodon.social/tags/IMolPAS" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>IMolPAS</span></a> <a href="https://mastodon.social/tags/NCN" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>NCN</span></a></p>
SIB Swiss Bioinformatics<p>💡 Want to make the most of cell line data? Join this <a href="https://mstdn.science/tags/BC2Basel" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BC2Basel</span></a> tutorial to explore Cellosaurus, from ontologies to APIs to real-world use cases.</p><p>🔹Taught by Amos Bairoch &amp; Pierre-André Michel (SIB).</p><p>📅 Mon 8 Sep at <a href="https://mstdn.science/tags/bc2" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bc2</span></a> </p><p>👉Register: tinyurl.com/5n8w3pwb</p><p><a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.science/tags/Cellosaurus" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Cellosaurus</span></a> <a href="https://mstdn.science/tags/celllines" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>celllines</span></a> <a href="https://mstdn.science/tags/lifesciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>lifesciences</span></a> <a href="https://mstdn.science/tags/FAIRdata" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>FAIRdata</span></a></p>
jobRxiv<p>Postdoctoral Research Scientist </p><p>Earlham Institute</p><p>Applications are invited for a Postdoctoral Research Scientist to join the Research Faculty Department at the Earlham Institute, based in Norwich, UK.</p><p>See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">jobrxiv.org/job/earlham-instit</span><span class="invisible">ute-27778-postdoctoral-research-scientist-7/?feed_id=96198</span></a></p><p><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mas.to/tags/computational_biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>computational_biology</span></a> <a href="https://mas.to/tags/computational_ge" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>computational_ge</span></a>...<br><a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">jobrxiv.org/job/earlham-instit</span><span class="invisible">ute-27778-postdoctoral-research-scientist-7/?feed_id=96198</span></a></p>
J9C :arcgis: :python: :osm:<p><span class="h-card" translate="no"><a href="https://scicomm.xyz/@Haonan" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>Haonan</span></a></span> welcome to Mastodon! I've added some tags to help you connect. </p><p><a href="https://mapstodon.space/tags/proteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>proteomics</span></a> <a href="https://mapstodon.space/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://mapstodon.space/tags/database" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>database</span></a> <a href="https://mapstodon.space/tags/spectometry" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>spectometry</span></a><br><a href="https://mapstodon.space/tags/introductions" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>introductions</span></a> <a href="https://mapstodon.space/tags/stem" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>stem</span></a></p>
Marc Robinson-Rechavi<p>You can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!<br><a href="https://tinyurl.com/3aewk286" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">tinyurl.com/3aewk286</span><span class="invisible"></span></a> <br><a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EvoDevo</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PopulationGenomics</span></a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNAseq</span></a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PostDoc</span></a></p>
Bioinfhotep<p><a href="https://genomic.social/tags/htslib" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>htslib</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/GenomicsIO" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>GenomicsIO</span></a> <br><span class="h-card" translate="no"><a href="https://genomic.social/@yokofakun" class="u-url mention" rel="nofollow noopener" target="_blank">@<span>yokofakun</span></a></span> any idea what is the fastest method to get the nth bcf record using htslib or bcftools.h without explicit loops? (trying out something similar to your project <a href="https://github.com/lindenb/rbcf" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">github.com/lindenb/rbcf</span><span class="invisible"></span></a> but with ALTREP) <br>I guess it is possible to guess which block to (lazy) parse if one know the blocks offsets and number of records per block</p>
Luke Pembleton<p>Anyone have any recommendations on a free online short course that they have found useful in the fields of <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/agriculture" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>agriculture</span></a> <a href="https://genomic.social/tags/rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>rstats</span></a> or related?</p>
Luke Pembleton<p>Maybe I need another coffee, but is there anyway to tell <a href="https://genomic.social/tags/bcftools" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bcftools</span></a> what ALT allele to add to the ALT column of a called vcf even if it wasn't observed in the read data (instead of '.') i.e. a known ALT allele from another larger dataset?<br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>
Bioconductor<p>📝 New Bioconductor blog post!</p><p>We’ve just published a recap of our first in-person course in Africa, held in Nairobi this March 🇰🇪<br>Read about the highlights, feedback, and what’s next:<br>👉 <a href="https://blog.bioconductor.org/posts/2025-05-21-kenya-course/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">blog.bioconductor.org/posts/20</span><span class="invisible">25-05-21-kenya-course/</span></a></p><p><a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/BioconductorAfrica" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>BioconductorAfrica</span></a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>OpenScience</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/CapacityBuilding" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>CapacityBuilding</span></a></p>
Marc Robinson-Rechavi<p>Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!<br><a href="https://tinyurl.com/3aewk286" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">tinyurl.com/3aewk286</span><span class="invisible"></span></a> <br><a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>EvoDevo</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PopulationGenomics</span></a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>RNAseq</span></a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>PostDoc</span></a></p>
SIB Swiss Bioinformatics<p>🎉 Welcome to Maria Boulos-Richter, our newest Board member at SIB! She joins as an external advisor and recently took part in her first meeting.</p><p>More on our governance: <a href="https://www.sib.swiss/about/governance-and-organization" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sib.swiss/about/governance-and</span><span class="invisible">-organization</span></a></p><p><a href="https://mstdn.science/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Bioinformatics</span></a></p>
Stephan Schiffels<p>Summer course in analysis of high throughput data for population genetics 2025 in Copenhagen. Registration is open. Highly recommended: <a href="https://website.popgen.dk/summer/" rel="nofollow noopener" translate="no" target="_blank"><span class="invisible">https://</span><span class="">website.popgen.dk/summer/</span><span class="invisible"></span></a> <a href="https://ecoevo.social/tags/genetics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>genetics</span></a> <a href="https://ecoevo.social/tags/Phd" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>Phd</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#<span>bioinformatics</span></a></p>