Social 📸 Photography

Egon Willighagenyeah, that's cool"Now, researchers have found a way to image the sugars at a resolution of just 9 Ångström — 0.9 nanometres — using an off-the-shelf light microscope." <a href="https://doi.org/10.1038/d41586-025-02376-2" rel="nofollow noopener" translate="no" target="_blank">https://doi.org/10.1038/d41586-025-02376-2</a> and <a href="https://doi.org/10.1038/s41565-025-01966-5" rel="nofollow noopener" translate="no" target="_blank">https://doi.org/10.1038/s41565-025-01966-5</a><a href="https://social.edu.nl/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://social.edu.nl/tags/sugar" class="mention hashtag" rel="nofollow noopener" target="_blank">#sugar</a>

Bose-Einstein-Kondensat<a href="https://mstdn.social/tags/MolPrint3D" class="mention hashtag" rel="nofollow noopener" target="_blank">#MolPrint3D</a>: A <a href="https://mstdn.social/tags/Blender" class="mention hashtag" rel="nofollow noopener" target="_blank">#Blender</a> add-on for enhanced <a href="https://mstdn.social/tags/3Dprinting" class="mention hashtag" rel="nofollow noopener" target="_blank">#3Dprinting</a> of ball-and-stick <a href="https://mstdn.social/tags/molecular" class="mention hashtag" rel="nofollow noopener" target="_blank">#molecular</a> models: <a href="https://doi.org/10.1021/acs.jchemed.7b00549" rel="nofollow noopener" translate="no" target="_blank">https://doi.org/10.1021/acs.jchemed.7b00549</a> <a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener" target="_blank">#DIYbio</a> <a href="https://mstdn.social/tags/chemistry" class="mention hashtag" rel="nofollow noopener" target="_blank">#chemistry</a> <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener" target="_blank">#lab</a> <a href="https://mstdn.social/tags/CompChem" class="mention hashtag" rel="nofollow noopener" target="_blank">#CompChem</a> <a href="https://mstdn.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://mstdn.social/tags/visualization" class="mention hashtag" rel="nofollow noopener" target="_blank">#visualization</a> <a href="https://mstdn.social/tags/MINT" class="mention hashtag" rel="nofollow noopener" target="_blank">#MINT</a> <a href="https://mstdn.social/tags/STEM" class="mention hashtag" rel="nofollow noopener" target="_blank">#STEM</a> <a href="https://mstdn.social/tags/EDU" class="mention hashtag" rel="nofollow noopener" target="_blank">#EDU</a> <a href="https://mstdn.social/tags/school" class="mention hashtag" rel="nofollow noopener" target="_blank">#school</a> <a href="https://mstdn.social/tags/Schule" class="mention hashtag" rel="nofollow noopener" target="_blank">#Schule</a> <a href="https://mstdn.social/tags/education" class="mention hashtag" rel="nofollow noopener" target="_blank">#education</a>

Luke PembletonOn NCBI what determines which genome assembly gets the green 'reference" star tag? I'm seeming a scaffold level assembly with 40X coverage from 2019 getting the 'reference' star whilst a complete chromosome scale assembly with 300X coverage from 2021 for the same species not... Is this a community driven label that just takes time to update? <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#genomics</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

PuckerLabInterested in learning about plant genomics? We're offering an opportunity for a few students to join our genomics team and gain hands-on experience in DNA extraction, ONT sequencing, and data analysis. Reach out if you're interested: <a href="https://www.pbb.uni-bonn.de" rel="nofollow noopener" translate="no" target="_blank">https://www.pbb.uni-bonn.de</a> <a href="https://genomic.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Genomics</a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> <a href="https://genomic.social/tags/PlantScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#PlantScience</a> <a href="https://genomic.social/tags/OpenScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#OpenScience</a> <a href="https://mastodon.social/@boas_pucker" class="u-url mention" rel="nofollow noopener" target="_blank">@boas_pucker</a>

Dave LuntWhenever I see a DNA logo from a lab, bioinformatics/genomics centre, hackathon, or training course and it’s backwards I sigh a little. I don’t point them out anymore as I usually just receive passive aggression, but what does it say about you that you don’t care? Several big ones in my stream today. If an entomology training centre had a logo with an 8-legged fly it’d be weird right? <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#genomics</a> <a href="https://genomic.social/tags/DNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#DNA</a>

Victoria Stuart 🇨🇦 🏳️‍⚧️GREmLN: A Cellular Regulatory Network-Aware Transcriptomics Foundation Model <a href="https://www.biorxiv.org/content/10.1101/2025.07.03.663009v1?rss=1" rel="nofollow noopener" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2025.07.03.663009v1?rss=1</a>Comments * really brilliant work: LLM + neural transformer architecture * a molecular biologist, I long-thought (no time to learn / program) flux-based analysis / ODE models * this type of modeling is foundational to in silico modeling * huge proponent of graphs - add LLM, attention heads - brilliant! 😀 👍️ kudos<a href="https://mastodon.social/tags/BiologicalModeling" class="mention hashtag" rel="nofollow noopener" target="_blank">#BiologicalModeling</a> <a href="https://mastodon.social/tags/FoundationModels" class="mention hashtag" rel="nofollow noopener" target="_blank">#FoundationModels</a> <a href="https://mastodon.social/tags/LLM" class="mention hashtag" rel="nofollow noopener" target="_blank">#LLM</a> <a href="https://mastodon.social/tags/attention" class="mention hashtag" rel="nofollow noopener" target="_blank">#attention</a> <a href="https://mastodon.social/tags/GraphTheory" class="mention hashtag" rel="nofollow noopener" target="_blank">#GraphTheory</a> <a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

LeszekGroup leader position in Oslo, Norway <a href="https://genomic.social/tags/JobAd" class="mention hashtag" rel="nofollow noopener" target="_blank">#JobAd</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://www.jobbnorge.no/en/available-jobs/job/282908/group-leader" rel="nofollow noopener" translate="no" target="_blank">https://www.jobbnorge.no/en/available-jobs/job/282908/group-leader</a>

MottG"Valsci: an open-source, self-hostable literature review utility for automated large-batch scientific claim verification using large language models"We introduce Valsci, an open-source, self-hostable utility that automates large-batch scientific claim verification using any OpenAI-compatible large language model. Valsci unites RAG with structured bibliometric scoring and chain-of-thought prompting.<a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-025-06159-4" rel="nofollow noopener" translate="no" target="_blank">https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-025-06159-4</a><a href="https://researchbuzz.masto.host/tags/research" class="mention hashtag" rel="nofollow noopener" target="_blank">#research</a> <a href="https://researchbuzz.masto.host/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://researchbuzz.masto.host/tags/medicine" class="mention hashtag" rel="nofollow noopener" target="_blank">#medicine</a>

ISEPNew <a href="https://mstdn.science/tags/ISEPpapers" class="mention hashtag" rel="nofollow noopener" target="_blank">#ISEPpapers</a>! New T2T assembly of <a href="https://mstdn.science/tags/Cryptosporidium" class="mention hashtag" rel="nofollow noopener" target="_blank">#Cryptosporidium</a> parvum IOWA II annotated with Legacy-Compatible Gene identifiers <a href="https://www.nature.com/articles/s41597-025-05364-3" rel="nofollow noopener" translate="no" target="_blank">https://www.nature.com/articles/s41597-025-05364-3</a> <a href="https://mstdn.science/tags/Protists" class="mention hashtag" rel="nofollow noopener" target="_blank">#Protists</a> <a href="https://mstdn.science/tags/Microbes" class="mention hashtag" rel="nofollow noopener" target="_blank">#Microbes</a> <a href="https://mstdn.science/tags/Parasites" class="mention hashtag" rel="nofollow noopener" target="_blank">#Parasites</a> <a href="https://mstdn.science/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Genomics</a> <a href="https://mstdn.science/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> <a href="https://mstdn.science/tags/Genome" class="mention hashtag" rel="nofollow noopener" target="_blank">#Genome</a> <a href="https://mstdn.science/tags/Sequencing" class="mention hashtag" rel="nofollow noopener" target="_blank">#Sequencing</a>

Physalia-courses🚨 Last seats alert! 🚨 Our GWAS course kicks off next week (23–27 June)💥 Learn the full pipeline—from study design to result interpretation—with hands-on sessions using R and PLINK. 💻🧬👉 Grab your spot: <a href="https://www.physalia-courses.org/courses-workshops/course49/" rel="nofollow noopener" translate="no" target="_blank">https://www.physalia-courses.org/courses-workshops/course49/</a><a href="https://ecoevo.social/tags/GWAS" class="mention hashtag" rel="nofollow noopener" target="_blank">#GWAS</a> <a href="https://ecoevo.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Genomics</a> <a href="https://ecoevo.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> <a href="https://ecoevo.social/tags/Rstats" class="mention hashtag" rel="nofollow noopener" target="_blank">#Rstats</a>

Johan Nyström-PerssonExcited to announce our paper "Precise and scalable metagenomic profiling with sample-tailored minimizer libraries". <a href="https://academic.oup.com/nargab/article/7/2/lqaf076/8158581#522744339" rel="nofollow noopener" translate="no" target="_blank">https://academic.oup.com/nargab/article/7/2/lqaf076/8158581#522744339</a>1) We introduce a new implementation of the Kraken 2 method on Apache Spark, which has comparable cost-performance when classifying multiple samples.<a href="https://genomic.social/tags/metagenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#metagenomics</a> <a href="https://genomic.social/tags/Kraken2" class="mention hashtag" rel="nofollow noopener" target="_blank">#Kraken2</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

Amici Is Me 🇵🇸 🇺🇦 🇳🇴Writing my own peptide cutter because I think cleaver package in R has an outdated trypsin algorithm. Getting 25 fragments on the cleaver result, while manual peptide cutter on Expasy gives 27<a href="https://fribygda.no/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a>

Frank AylwardWhat's the easiest way to create a GenBank file from FASTA, GFF, BED, etc? All of the ways I know are unnecessarily difficult. I have always avoided GenBank format, but it's unavoidable sometimes. <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#genomics</a>

Marc Robinson-RechaviEditorial <a href="https://mstdn.science/@SIB" class="u-url mention" rel="nofollow noopener" target="_blank">@SIB</a> by <a href="https://mstdn.science/@dessimoz" class="u-url mention" rel="nofollow noopener" target="_blank">@dessimoz</a> "we must ensure (Switzerland's) continued science leadership – including in data expertise and infrastructure" <a href="https://www.sib.swiss/news/switzerlands-science-future-continued-leadership-or-drift-into-decline" rel="nofollow noopener" translate="no" target="_blank">https://www.sib.swiss/news/switzerlands-science-future-continued-leadership-or-drift-into-decline</a> <a href="https://ecoevo.social/tags/Switzerland" class="mention hashtag" rel="nofollow noopener" target="_blank">#Switzerland</a> <a href="https://ecoevo.social/tags/SwissScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#SwissScience</a> <a href="https://ecoevo.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener" target="_blank">#DataScience</a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://ecoevo.social/tags/ScienceFunding" class="mention hashtag" rel="nofollow noopener" target="_blank">#ScienceFunding</a>

Eugene F. Baulin📢Job Alert: Postdoctoral Researcher in the Laboratory of RNA Algorithms at <a href="https://imol.institute/" rel="nofollow noopener" translate="no" target="_blank">https://imol.institute/</a>, up to three years, fully funded by <a href="https://ncn.gov.pl/en" rel="nofollow noopener" translate="no" target="_blank">https://ncn.gov.pl/en</a> Details here: <a href="https://euraxess.ec.europa.eu/jobs/350755" rel="nofollow noopener" translate="no" target="_blank">https://euraxess.ec.europa.eu/jobs/350755</a> <a href="https://mastodon.social/tags/postdoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#postdoc</a> <a href="https://mastodon.social/tags/Academia" class="mention hashtag" rel="nofollow noopener" target="_blank">#Academia</a> <a href="https://mastodon.social/tags/Position" class="mention hashtag" rel="nofollow noopener" target="_blank">#Position</a> <a href="https://mastodon.social/tags/Job" class="mention hashtag" rel="nofollow noopener" target="_blank">#Job</a> <a href="https://mastodon.social/tags/Research" class="mention hashtag" rel="nofollow noopener" target="_blank">#Research</a> <a href="https://mastodon.social/tags/RNA" class="mention hashtag" rel="nofollow noopener" target="_blank">#RNA</a> <a href="https://mastodon.social/tags/Structure" class="mention hashtag" rel="nofollow noopener" target="_blank">#Structure</a> <a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> <a href="https://mastodon.social/tags/Poland" class="mention hashtag" rel="nofollow noopener" target="_blank">#Poland</a> <a href="https://mastodon.social/tags/Warsaw" class="mention hashtag" rel="nofollow noopener" target="_blank">#Warsaw</a> <a href="https://mastodon.social/tags/IMolPAS" class="mention hashtag" rel="nofollow noopener" target="_blank">#IMolPAS</a> <a href="https://mastodon.social/tags/NCN" class="mention hashtag" rel="nofollow noopener" target="_blank">#NCN</a>

SIB Swiss Bioinformatics💡 Want to make the most of cell line data? Join this <a href="https://mstdn.science/tags/BC2Basel" class="mention hashtag" rel="nofollow noopener" target="_blank">#BC2Basel</a> tutorial to explore Cellosaurus, from ontologies to APIs to real-world use cases.🔹Taught by Amos Bairoch & Pierre-André Michel (SIB).📅 Mon 8 Sep at <a href="https://mstdn.science/tags/bc2" class="mention hashtag" rel="nofollow noopener" target="_blank">#bc2</a> 👉Register: tinyurl.com/5n8w3pwb<a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://mstdn.science/tags/Cellosaurus" class="mention hashtag" rel="nofollow noopener" target="_blank">#Cellosaurus</a> <a href="https://mstdn.science/tags/celllines" class="mention hashtag" rel="nofollow noopener" target="_blank">#celllines</a> <a href="https://mstdn.science/tags/lifesciences" class="mention hashtag" rel="nofollow noopener" target="_blank">#lifesciences</a> <a href="https://mstdn.science/tags/FAIRdata" class="mention hashtag" rel="nofollow noopener" target="_blank">#FAIRdata</a>

jobRxivPostdoctoral Research Scientist Earlham InstituteApplications are invited for a Postdoctoral Research Scientist to join the Research Faculty Department at the Earlham Institute, based in Norwich, UK.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198" rel="nofollow noopener" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/computational_biology" class="mention hashtag" rel="nofollow noopener" target="_blank">#computational_biology</a> <a href="https://mas.to/tags/computational_ge" class="mention hashtag" rel="nofollow noopener" target="_blank">#computational_ge</a>... <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198" rel="nofollow noopener" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=96198</a>

J9C :arcgis: :python: :osm:<a href="https://scicomm.xyz/@Haonan" class="u-url mention" rel="nofollow noopener" target="_blank">@Haonan</a> welcome to Mastodon! I've added some tags to help you connect. <a href="https://mapstodon.space/tags/proteomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#proteomics</a> <a href="https://mapstodon.space/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://mapstodon.space/tags/database" class="mention hashtag" rel="nofollow noopener" target="_blank">#database</a> <a href="https://mapstodon.space/tags/spectometry" class="mention hashtag" rel="nofollow noopener" target="_blank">#spectometry</a> <a href="https://mapstodon.space/tags/introductions" class="mention hashtag" rel="nofollow noopener" target="_blank">#introductions</a> <a href="https://mapstodon.space/tags/stem" class="mention hashtag" rel="nofollow noopener" target="_blank">#stem</a>

Marc Robinson-RechaviYou can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm! <a href="https://tinyurl.com/3aewk286" rel="nofollow noopener" translate="no" target="_blank">https://tinyurl.com/3aewk286</a> <a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener" target="_blank">#EvoDevo</a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener" target="_blank">#MolecularEvolution</a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#bioinformatics</a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener" target="_blank">#PopulationGenomics</a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener" target="_blank">#RNAseq</a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener" target="_blank">#PostDoc</a>

SMT<a href="https://genomic.social/tags/htslib" class="mention hashtag" rel="nofollow noopener" target="_blank">#htslib</a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener" target="_blank">#Bioinformatics</a> <a href="https://genomic.social/tags/GenomicsIO" class="mention hashtag" rel="nofollow noopener" target="_blank">#GenomicsIO</a> <a href="https://genomic.social/@yokofakun" class="u-url mention" rel="nofollow noopener" target="_blank">@yokofakun</a> any idea what is the fastest method to get the nth bcf record using htslib or bcftools.h without explicit loops? (trying out something similar to your project <a href="https://github.com/lindenb/rbcf" rel="nofollow noopener" translate="no" target="_blank">https://github.com/lindenb/rbcf</a> but with ALTREP) I guess it is possible to guess which block to (lazy) parse if one know the blocks offsets and number of records per block

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