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#pathogen

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X is terrible, but after the Meta news on explicitly allowing transphobia / transmisia, overall it's just been a tough week.
Idk what I have but my asthma attack started last week. Elevated neutrophils indicate bacterial infection, my GP said? So either it was "probably viral" like the OoH 111 GP said and became bacterial as well, or I was unlucky that it was bacterial to begin with.

I've been on Prednisolone, a corticosteroid since the 9th; then last night I started Doxycyline, an antibiotic, and Montelukast.
Montelukast is a leukotriene receptor antagonist, so it blocks leukotrienes, my patient pamphlet says.

Got a chest X ray out of it, at least. (Had back pain behind my ex-gallbladder since its removal anyway.)
Let this be a lesson not to lessen your mask discipline or stubbornness when other people peer pressure you to take risks with your health.
This is my first asthma exacerbation in a decade and I do not want to continue experiencing this. I do not recommend it. The people telling me I was 'paranoid', 'over-thinking it', 'worried about nothing' and more do NOT have to feel what I am feeling.

Teenage boys in public who choose to whine at me and intentionally coughing towards me (what?!!?) is super aggressive, creepy, entitled, and harmful to everyone witnessing that. Still, my upper and mid back has not stopped aching. I don't get fevers and I don't have a cough. Only you know your body.

Some people choose to care about harm reduction; others don't. Do right by yourself and do your sustainable best by others. I believe in you!

youtube.com/watch?v=My_wEXmNgt

I saw my first myrtle rust in Christchurch this afternoon (while at a dance performance of my daughter’s). This is the 24th confirmed observation on #iNaturalist of this pathogen in Canterbury.

The Brazilian pathogen attacks, and can kill, trees in the Myrtle family (like pohutukawa, rata, and eucalyptus) and is an invasive pathogen worldwide. It arrived in NZ, in Northland, in May 2017.

I found it on a planted ramarama hybrid.

inaturalist.nz/observations/25

iNaturalist NZMyrtle Rust (Austropuccinia psidii)Myrtle Rust from Merivale, Christchurch, New Zealand on December 7, 2024 at 04:25 PM by Jon Sullivan. This is the first time I've seen myrtle rust in Canterbury and I've been watching out for it sinc...

Look at this barking mad fun gal growth! This is a younger specimen of a conifer pathogenic fungus Phaeolus schweinitzii. Undergrowth grows through it as if it was made of aerogel and yet, after two days of no rainfall in the area, it's able to retain a puddle of rain water on its velvety fruiting body. It's not the prettiest of the bunch but still a very interesting fungus. Shame she's ill-tempered :)

I remember this story from last year...

#Pathogen’ Storm: #VibrioBacteria, #Sargassum and #Plastic Marine Debris

By gisele galoustian | 5/18/2023

"A new study uncovers how the interplay between Sargassum spp., plastic marine debris and Vibrio bacteria creates the perfect 'pathogen' storm that has implications for both marine life and public health. Vibrio bacteria are found in waters around the world and are the dominant cause of death in humans from the marine environment. For example, Vibrio vulnificus, one of more than 100 species of Vibrio, sometimes referred to as flesh-eating bacteria, can cause life-threatening foodborne illnesses from #seafood consumption as well as disease and death from open #wound infections.

"Since 2011, Sargassum, free-living populations of brown macroalga, have been rapidly expanding in the #SargassoSea and other parts of the open ocean such as the Great Atlantic Sargassum Belt, including frequent and unprecedented seaweed accumulation events on beaches. Plastic marine debris, first found in surface waters of the Sargasso Sea, has become a worldwide concern, and is known to persist decades longer than natural substrates in the marine environment.

"Currently, little is known about the ecological relationship of vibrios with Sargassum. Moreover, genomic and metagenomic evidence has been lacking as to whether vibrios colonizing plastic marine debris and Sargassum could potentially infect humans. As summer kicks into high gear and efforts are underway to find innovative solutions to repurpose Sargassum, could these substrates pose a triple threat to public health?

"Researchers from Florida Atlantic University and collaborators fully sequenced the genomes of 16 Vibrio cultivars isolated from eel larvae, plastic marine debris, Sargassum, and seawater samples collected from the Caribbean and Sargasso seas of the North Atlantic Ocean. What they discovered is Vibrio pathogens have the unique ability to 'stick' to microplastics and that these microbes might just be adapting to plastic.

“'Plastic is a new element that’s been introduced into marine environments and has only been around for about 50 years,' said Tracy Mincer, Ph.D., corresponding lead author and an assistant professor of biology at FAU’s Harbor Branch Oceanographic Institute and Harriet L. Wilkes Honors College. 'Our lab work showed that these Vibrio are extremely aggressive and can seek out and stick to plastic within minutes. We also found that there are attachment factors that microbes use to stick to plastics, and it is the same kind of mechanism that pathogens use.'

"The study, published in the journal Water Research , illustrates that open ocean vibrios represent an up to now undescribed group of microbes, some representing potential new species, possessing a blend of pathogenic and low nutrient acquisition genes, reflecting their pelagic habitat and the substrates and hosts they colonize. Utilizing metagenome-assembled genome (MAG), this study represents the first Vibrio spp. genome assembled from plastic debris.

"The study highlighted vertebrate pathogen genes closely related to cholera and non-cholera bacterial strains. Phenotype testing of cultivars confirmed rapid biofilm formation, hemolytic and lipophospholytic activities, consistent with pathogenic potential.

"Researchers also discovered that zonula occludens toxin or 'zot' genes, first described in Vibrio cholerae, which is a secreted toxin that increases intestinal permeability, were some of the most highly retained and selected genes in the vibrios they found. These vibrios appear to be getting in through the gut, getting stuck in the intestines and infecting that way.

"'Another interesting thing we discovered is a set of genes called ‘zot’ genes, which causes leaky gut syndrome,' said Mincer. 'For instance, if a fish eats a piece of plastic and gets infected by this Vibrio, which then results in a #LeakyGut and diarrhea, it’s going to release waste nutrients such #nitrogen and #phosphate that could stimulate Sargassum growth and other surrounding organisms.'

"Findings show some Vibrio spp. in this environment have an ‘omnivorous’ lifestyle targeting both plant and animal hosts in combination with an ability to persist in oligotrophic conditions. With increased human-Sargassum-plastic marine debris interactions, associated microbial flora of these substrates could harbor potent opportunistic pathogens. Importantly, some cultivation-based data show beached Sargassum appear to harbor high amounts of Vibrio bacteria.

"'I don’t think at this point, anyone has really considered these microbes and their capability to cause infections,' said Mincer. 'We really want to make the public aware of these associated risks. In particular, caution should be exercised regarding the harvest and processing of Sargassum biomass until the risks are explored more thoroughly.'"

fau.edu/newsdesk/articles/perf

#WaterIsLife #Microplastics #PlasticPollution #Anticonsumerism #Degrowth
#PlasticAlternatives #CleanUpYourMess #BigCorporations #Consumerism #Advertising

www.fau.edu‘Pathogen’ Storm: Vibrio Bacteria, Sargassum and Plastic Marine DebrisAs summer kicks off and efforts are underway to find solutions to repurpose Sargassum, could the interplay between this seaweed, Vibrio bacteria and plastic marine debris pose a triple threat to public health?

#Genomic analysis sheds light on how #seagrasses conquered the sea
phys.org/news/2024-01-genomic-

#Seagrass #genomes reveal ancient #polyploidy and adaptations to the marine environment nature.com/articles/s41477-023

"Seagrasses evolved from their #freshwater ancestors only 3x. To do this required specialized ecological tolerance to high #salinity, lower light, a wide range of temperature tolerances, #underwater carbon capture, different #pathogen defense, structural flexibility and underwater #pollination"

Beyond beauty, colour serves important functions for #frogs and #toads around the world
communities.springernature.com paper: nature.com/articles/s41467-023

"The study documents for the first time the importance of colour-based #thermoregulation, #UVprotection, and #pathogen resistance in #anurans... Thermoregulation and #UV-protection was generally of greater importance in temperate regions, and pathogen resistance was of greater importance in the #tropics."

This week sees the final opening of the new Vaccine Development & Evaluation Centre at Porton Down.

For an investment of £65mn the Govt. hopes to be able to develop a #vaccine response to any #pathogen, such as a new wave of #Coronavirus, within 100 days; whatever we think about #Tories past efforts as disease control, this seems like a sensible & timely #investment.

But, its proximity to a defence facility (working on similar issues but for defence) will set the #socialmedia rumours flying!

I guess I should do an #introduction -- I'm a computational biologist working at the intersection of bacterial #PathogenGenomics and #FunctionalGenomics, mostly on sequencing-based technologies, and run a research group at the Helmholtz Institute for RNA-based Infection Research in Würzburg.

We dabble in #MachineLearning, #BayesianStatistics, and #DataVisualization, figuring out ways to apply these techniques to investigate #Pathogen #GeneRegulation and #Evolution.